Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds) |
Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily) Multidomain subunits of complex domain organization |
Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families) The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit |
Family e.29.1.2: RNA-polymerase beta-prime [64490] (2 proteins) |
Protein RNA-polymerase beta-prime [64493] (2 species) |
Species Thermus thermophilus [TaxId:274] [75610] (13 PDB entries) Uniprot Q8RQE8; part of multichain biological unit |
Domain d1zyrd1: 1zyr D:2-1505 [125854] Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc1, d1zyre1, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm1, d1zyro1, d1zyrp1, d1zyrp2, d1zyrp3 automatically matched to d1iw7d_ protein/RNA complex; complexed with mg, std, zn |
PDB Entry: 1zyr (more details), 3 Å
SCOPe Domain Sequences for d1zyrd1:
Sequence, based on SEQRES records: (download)
>d1zyrd1 e.29.1.2 (D:2-1505) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} kkevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacg kykrqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsat eleqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkd geevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgei laelpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekg qplaeakgllrmprqvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarv eagdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgdrvapgdvl adggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealekelleem khpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfatsdln dlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtnpgsdrplr sltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkm eekgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlv egqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakp srdiilglyyitqvrkekkgaglefatpeealaahergevalnapikvagretsvgrlky vfanpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavedekvaweliq ldvpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigiddavipeekk qyleeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfeenypfnply vmaqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfisshgarkgg adtalrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslrlrkradie aglygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrspltcqtrygvc qkcygydlsmarpvsigeavgivaaqsigepgtqltmrtfhtggvagaaditqglprvie lfearrpkakaviseidgvvrieeteeklsvfvesegfskeyklpkearllvkdgdyvea gqpltrgaidphqlleakgpeaverylveeiqkvyraqgvklhdkhieivvrqmmkyvev tdpgdsrllegqvlekwdvealnerliaegktpvawkpllmgvtksalstkswlsaasfq ntthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqktlkaieearke avea
>d1zyrd1 e.29.1.2 (D:2-1505) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} kkevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacg kykrqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsat eleqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkd geevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgei laelpepylfgdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgd rvapgdvladggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldleal ekelleemkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdgg rfatsdlndlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtn pgsdrplrsltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelf kpfllkkmeekgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgi qafqpvlvegqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspa sgeplakpsrdiilglyyitqvrkekkgaglefatpeealaahergevalnapikvagre tsvgrlkyvfanpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavede kvaweliqldvpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigidd avipeekkqyleeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfee nypfnplyvmaqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfis shgarkggadtalrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslr lrkradieaglygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrsplt cqtrygvcqkcygydlsmarpvsigeavgivaaqsigepgtqltmrtfhtggvagaadit qglprvielfearrpkakaviseidgvvrieeteeklsvfvesegfskeyklpkearllv kdgdyveagqpltrgaidphqlleakgpeaverylveeiqkvyraqgvklhdkhieivvr qmmkyvevtdpgdsrllegqvlekwdvealnerliaegktpvawkpllmgvtksalstks wlsaasfqntthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqktlk aieearkeavea
Timeline for d1zyrd1: