SCOPe 2.08: Domain d1zupb_: 1zup B:

Lineage for d1zupb_ (1zup B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.11: TM1739-like [142505] (1 protein)
   Pfam PF04251; DUF430; particular similarity to the PIWI domain family

6. Protein Hypothetical protein TM1739 [142506] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [142507] (1 PDB entry)
   Uniprot Q9X261 1-301

8. Domain d1zupb_: 1zup B: [125682]
   Other proteins in same PDB: d1zupa2
   automated match to d1zupa1

Details for d1zupb_

PDB Entry: 1zup, 2.2 Å

PDB Description: crystal structure of a putative nuclease with a ribonuclease h-like motif fold (tm1739) from thermotoga maritima at 2.20 a resolution

PDB Compounds: (B:) hypothetical protein TM1739

SCOPe Domain Sequences for d1zupb_:

Sequence, based on SEQRES records:

>d1zupb_ c.55.3.11 (B:) Hypothetical protein TM1739 {Thermotoga maritima [TaxId: 2336]}
rieraerieseleehvgdqtfveesrfleedeqregeildqiifvdgkrrsfvrittdeg
itgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqeegyeevggilfkvvk
egkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfeenvgpiglvknigvte
lskedfkklrflkkgkrskmfvssretplkkvgayvklidgegirglvrletyvkddnqi
pyirkvfddlaktlphltadlpiprlpenilpiqfleenlsyyltdknymntrlfayig

Sequence, based on observed residues (ATOM records):

>d1zupb_ c.55.3.11 (B:) Hypothetical protein TM1739 {Thermotoga maritima [TaxId: 2336]}
rieraerieseleehvgdqtfveesrfleedeqregeildqiifvdgkrrsfvrittdeg
itgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqeegyeevggilfkvvk
egkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfeenvgpiglvknigvte
lskedfkklrflkkgkrskmfvskvgayvklidgegirglvrletyddnqipyirkvfdd
laktlphltadlplpenilpiqfleenlsyyltdknymntrlfayig

Timeline for d1zupb_:

• d1zupb_ first appeared in SCOP 1.73, called d1zupb1
  
• d1zupb_ appears in SCOPe 2.07