SCOPe 2.07: Domain d1zbra1: 1zbr A:3-341

Lineage for d1zbra1 (1zbr A:3-341)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (3 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein Putative peptidyl-arginine deiminase [111158] (3 species)

7. Species Porphyromonas gingivalis [TaxId:837] [143808] (1 PDB entry)
   Uniprot Q7MXM8 3-341

8. Domain d1zbra1: 1zbr A:3-341 [124868]
   Other proteins in same PDB: d1zbrb_

Details for d1zbra1

PDB Entry: 1zbr, 2.6 Å

PDB Description: crystal structure of the putative arginine deiminase from porphyromonas gingivalis, northeast structural genomics target pgr3

PDB Compounds: (A:) conserved hypothetical protein

SCOPe Domain Sequences for d1zbra1:

Sequence; same for both SEQRES and ATOM records:

>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]}
krlflpewapqeavqltwphdrtdwaymldevetcfvriatailrherlivvcpdrkrvf
gllppelhhrlycfelpsndtwardhggislladgrpmiadfafngwgmkfaahhdnlit
rrlhalglfaegvtldnrlafvleggaletdgegtllttdsclfepnrnaglsrtaiidt
lkeslgvsrvlslrhgalagddtdghidtlarfvdtrtivyvrsedpsdehysdltameq
elkelrrpdgqpyrlvplpmaealydgadrlpatyanfliingavlvptydshldavals
vmqglfpdrevigidcrplvkqhgslhcvtmqypqgfir

Timeline for d1zbra1:

• d1zbra1 first appeared in SCOP 1.73
  
• d1zbra1 appears in SCOPe 2.06
  
• d1zbra1 appears in the current release, SCOPe 2.08