SCOPe 2.08: Domain d1z5bb2: 1z5b B:307-463

Lineage for d1z5bb2 (1z5b B:307-463)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
   core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover

4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)

5. Family d.14.1.3: DNA gyrase/MutL, second domain [54224] (6 proteins)

6. Protein Topoisomerase VI-B subunit [82577] (1 species)
   contains an H2TH domain inserted in front of this domain and after the N-terminal ATPase domain

7. Species Sulfolobus shibatae [TaxId:2286] [82578] (7 PDB entries)

8. Domain d1z5bb2: 1z5b B:307-463 [124468]
   Other proteins in same PDB: d1z5ba1, d1z5ba3, d1z5bb1, d1z5bb3
   automated match to d2hkja2
   complexed with adp, alf, mg, so4

Details for d1z5bb2

PDB Entry: 1z5b, 2 Å

PDB Description: Topoisomerase VI-B, ADP AlF4- bound dimer form

PDB Compounds: (B:) Type II DNA topoisomerase VI subunit B

SCOPe Domain Sequences for d1z5bb2:

Sequence; same for both SEQRES and ATOM records:

>d1z5bb2 d.14.1.3 (B:307-463) Topoisomerase VI-B subunit {Sulfolobus shibatae [TaxId: 2286]}
rspsadslsvigedlielglkkifnpdfaasitrkpkayqghpfiveagvafggsipvge
epivlryankipliydeksdviwkvveeldwkrygiesdqyqmvvmvhlcstkipyksag
kesiaevediekeiknalmevarklkqylsekrkeqe

Timeline for d1z5bb2:

• d1z5bb2 first appeared in SCOP 1.73
  
• d1z5bb2 appears in SCOPe 2.07