SCOPe 2.07: Domain d1z25a1: 1z25 A:1-323

Lineage for d1z25a1 (1z25 A:1-323)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.14: PAZ domain [101690] (2 families)

5. Family b.34.14.1: PAZ domain [101691] (6 proteins)

6. Protein Argonaute homologue PF0537 [110167] (1 species)
   includes the N-terminal domain

7. Species Pyrococcus furiosus [TaxId:2261] [110168] (3 PDB entries)
   Uniprot Q8U3D2

8. Domain d1z25a1: 1z25 A:1-323 [124370]
   Other proteins in same PDB: d1z25a3, d1z25a4, d1z25a5
   automated match to d1u04a1
   complexed with mn

Details for d1z25a1

PDB Entry: 1z25, 2.7 Å

PDB Description: structure of p.furiosus argonaute with bound mn2+

PDB Compounds: (A:) Argonaute

SCOPe Domain Sequences for d1z25a1:

Sequence, based on SEQRES records:

>d1z25a1 b.34.14.1 (A:1-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
mkaivvinlvkinkkiipdkiyvyrlfndpeeelqkegysiyrlayenvgividpenlii
attkeleyegefipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfg
dykvipsvemsvikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlk
diasplktvykpcfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdl
kqpailakfaskikknknykiyllpqlvvptynaeqlesdvakeileytklmpeerkell
enilaevdsdiidkslseievek

Sequence, based on observed residues (ATOM records):

>d1z25a1 b.34.14.1 (A:1-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
mkaivvinlvkinkkiipdkiyvyrlysiyrlayenvgividpenliiattkeleyegef
ipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfgdykvipsvemsv
ikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlkdiasplktvykp
cfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdlkqpailakfask
nykiyllpqlvvptynaeqlakeileytklmpeerkellenilaevdsdiidkslseiev
ek

Timeline for d1z25a1:

• d1z25a1 first appeared in SCOP 1.73
  
• d1z25a1 appears in SCOPe 2.06
  
• d1z25a1 appears in the current release, SCOPe 2.08