SCOPe 2.04: Domain d1yzka_: 1yzk A:

Lineage for d1yzka_ (1yzk A:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (79 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein automated matches [190047] (24 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [186768] (124 PDB entries)

8. Domain d1yzka_: 1yzk A: [124281]
   automated match to d1oiva_
   complexed with gnp, mg

Details for d1yzka_

PDB Entry: 1yzk, 2 Å

PDB Description: gppnhp bound rab11 gtpase

PDB Compounds: (A:) Ras-related protein Rab-11A

SCOPe Domain Sequences for d1yzka_:

Sequence; same for both SEQRES and ATOM records:

>d1yzka_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
ydylfkvvligdsgvgksnllsrftrnefnleskstigvefatrsiqvdgktikaqiwdt
agqeryraitsayyrgavgallvydiakhltyenverwlkelrdhadsnivimlvgnksd
lrhlravptdearafaeknglsfietsaldstnveaafqtilteiyri

Timeline for d1yzka_:

• d1yzka_ first appeared in SCOP 1.73, called d1yzka1
  
• d1yzka_ appears in SCOPe 2.03
  
• d1yzka_ appears in SCOPe 2.05
  
• d1yzka_ appears in the current release, SCOPe 2.08