SCOPe 2.08: Domain d1yypa2: 1yyp A:136-271

Lineage for d1yypa2 (1yyp A:136-271)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.131: DNA clamp [55978] (1 superfamily)
   contains two helices and two beta sheets
   duplication: fold has internal pseudo two-fold symmetry

4. Superfamily d.131.1: DNA clamp [55979] (3 families)

5. Family d.131.1.2: DNA polymerase processivity factor [55983] (5 proteins)
   duplication: consists of two domains of this fold

6. Protein UL44 [111176] (2 species)

7. Species Human cytomegalovirus, HHV-5 [TaxId:10359] [111177] (2 PDB entries)
   Uniprot P16790 1-290

8. Domain d1yypa2: 1yyp A:136-271 [124249]
   automated match to d1t6la2
   complexed with edo, so4

Details for d1yypa2

PDB Entry: 1yyp, 2.5 Å

PDB Description: crystal structure of cytomegalovirus ul44 bound to c-terminal peptide from cmv ul54

PDB Compounds: (A:) DNA polymerase processivity factor

SCOPe Domain Sequences for d1yypa2:

Sequence, based on SEQRES records:

>d1yypa2 d.131.1.2 (A:136-271) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
vresensavhvdldfgvvadllkwigphtrvkrnvkkapcptgtvqilvhagppaikfil
tngseleftsnnrvsfhgvknmrinvqlknfyqtllncavtklpctlrivtehdtllyva
srnglfavenflteep

Sequence, based on observed residues (ATOM records):

>d1yypa2 d.131.1.2 (A:136-271) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
vresensavhvdldfgvvadllkwigptgtvqilvhagppaikfiltngseleftsnnrv
sfhgvknmrinvqlknfyqtllncavtklpctlrivtehdtllyvasrnglfavenflte
ep

Timeline for d1yypa2:

• d1yypa2 first appeared in SCOP 1.73
  
• d1yypa2 appears in SCOPe 2.07