Lineage for d1yymq1 (1yym Q:1001-1107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653125Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (29 PDB entries)
  8. 653141Domain d1yymq1: 1yym Q:1001-1107 [124238]
    Other proteins in same PDB: d1yymg1, d1yymh1, d1yymh2, d1yyml2, d1yymp1, d1yymq2, d1yymr1, d1yymr2
    automatically matched to d1g9ml1
    complexed with edo, ipa, mpt, nag, ndg, vlm; mutant

Details for d1yymq1

PDB Entry: 1yym (more details), 2.2 Å

PDB Description: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB Compounds: (Q:) Antibody 17B Light chain

SCOP Domain Sequences for d1yymq1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yymq1 b.1.1.1 (Q:1001-1107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

SCOP Domain Coordinates for d1yymq1:

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Timeline for d1yymq1: