Lineage for d1yymg1 (1yym G:86-492)

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 878722Fold d.172: gp120 core [56501] (1 superfamily)
    unusual fold
  4. 878723Superfamily d.172.1: gp120 core [56502] (1 family) (S)
  5. 878724Family d.172.1.1: gp120 core [56503] (1 protein)
  6. 878725Protein gp120 core [56504] (1 species)
  7. 878726Species Human immunodeficiency virus type 1 [TaxId:11676] [56505] (20 PDB entries)
  8. 878734Domain d1yymg1: 1yym G:86-492 [124232]
    Other proteins in same PDB: d1yymh1, d1yymh2, d1yyml1, d1yyml2, d1yymm1, d1yymq1, d1yymq2, d1yymr1, d1yymr2, d1yyms1
    automatically matched to d1g9ng_
    complexed with edo, ipa, mpt, nag, ndg, vlm; mutant

Details for d1yymg1

PDB Entry: 1yym (more details), 2.2 Å

PDB Description: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB Compounds: (G:) Exterior membrane glycoprotein(GP120)

SCOP Domain Sequences for d1yymg1:

Sequence, based on SEQRES records: (download)

>d1yymg1 d.172.1.1 (G:86-492) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
lenvtenfnmwknnmveqmhediislwdqslkpcvkltplcvgagscntsvitqacpkvs
fepipihycapagfailkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeee
ivirsenftnnaktiivqlnesvvinctgaghcnlsktqwentleqiaiklkeqfgnnkt
iifnpssggdpeivthsfncggeffycnstqlftwndtrklnntgrnitlpcrikqiinm
wqevgkamyappirgqircssnitgllltrdggkdtngteifrpgggdmrdnwrselyky
kvvkie

Sequence, based on observed residues (ATOM records): (download)

>d1yymg1 d.172.1.1 (G:86-492) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
lenvtenfnmwknnmveqmhediislwdqslkpcvkltplcvgagscntsvitqacpkvs
fepipihycapagfailkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeee
ivirsenftnnaktiivqlnesvvinctgaghcnlsktqwentleqiaiklkeqfgnnkt
iifnpssggdpeivthsfncggeffycnstqlftwndrnitlpcrikqiinmwqevgkam
yappirgqircssnitgllltrdggkdtngteifrpgggdmrdnwrselykykvvkie

SCOP Domain Coordinates for d1yymg1:

Click to download the PDB-style file with coordinates for d1yymg1.
(The format of our PDB-style files is described here.)

Timeline for d1yymg1: