SCOPe 2.08: Domain d1ywkd2: 1ywk D:1001-1260

Lineage for d1ywkd2 (1ywk D:1001-1260)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

5. Family b.82.1.13: KduI-like [110318] (1 protein)
   Pfam PF04962: duplication: consists of two germin-like domains

6. Protein 5-keto-4-deoxyuronate isomerase KduI [110319] (2 species)

7. Species Enterococcus faecalis [TaxId:1351] [141602] (1 PDB entry)
   Uniprot Q838L9 1-260

8. Domain d1ywkd2: 1ywk D:1001-1260 [124158]
   Other proteins in same PDB: d1ywka2, d1ywkb3, d1ywkc3, d1ywkd3, d1ywke3, d1ywkf3
   automated match to d1ywka1

Details for d1ywkd2

PDB Entry: 1ywk, 2.95 Å

PDB Description: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate ketol- isomerase from enterococcus faecalis

PDB Compounds: (D:) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1

SCOPe Domain Sequences for d1ywkd2:

Sequence, based on SEQRES records:

>d1ywkd2 b.82.1.13 (D:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
metrythspadirhysteqlrdeflvekvfipgaisltythndrmifggvtptteeleii
ldkelgvdyflerrelgviniggpgfieidgaketmkkqdgyyigketkhvrfssenpdn
pakfyiscvpahhkypnvkisideitpmetgdpltlnqrkiyqyihpnvcescqlqmgyt
ilepgsawntmpchtherrmeayvyfdmeedtrifhmmgkpdetkhlvmsneqaaispsw
sihsgvgtsnysfiwamcge

Sequence, based on observed residues (ATOM records):

>d1ywkd2 b.82.1.13 (D:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
metrythspadirhysteqlrdeflvekvfipgaisltythndrmifggvtptteeleii
ldkelgvdyflerrelgviniggpgfieidgaketmkkqdgyyigketkhvrfssenpdn
pakfyiscvpahhkypnvkisideitpmetgdpltlnqrkiyqyihpnvcescqlqmgyt
ilepgsawntrmeayvyfdmeedtrifhmmgkpdetkhlvmsneqaaispswsihsgvgt
snysfiwamcge

Timeline for d1ywkd2:

• d1ywkd2 first appeared in SCOP 1.73, called d1ywkd1
  
• d1ywkd2 appears in SCOPe 2.07