SCOPe 2.04: Domain d1yvua2: 1yvu A:315-706

Lineage for d1yvua2 (1yvu A:315-706)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.10: PIWI domain [110640] (4 proteins)
   Pfam PF02171

6. Protein Argonaute homologue Aq_1447 [142501] (1 species)
   includes the middle domain

7. Species Aquifex aeolicus [TaxId:63363] [142502] (2 PDB entries)
   Uniprot O67434 315-706

8. Domain d1yvua2: 1yvu A:315-706 [124121]
   Other proteins in same PDB: d1yvua1
   complexed with ca

Details for d1yvua2

PDB Entry: 1yvu, 2.9 Å

PDB Description: Crystal structure of A. aeolicus Argonaute

PDB Compounds: (A:) hypothetical protein aq_1447

SCOPe Domain Sequences for d1yvua2:

Sequence, based on SEQRES records:

>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
klnfkdtvldakgkntkvitnlrkflelcrpfvkkdvlsveiisvsvykklewrkeeflk
elinflknkgiklkikgkslilaqtreeakeklipvinkikdvdlvivfleeypkvdpyk
sfllydfvkrellkkmipsqvilnrtlknenlkfvllnvaeqvlaktgnipyklkeiegk
vdafvgidisritrdgktvnavaftkifnskgelvryyltsypafgekltekaigdvfsl
leklgfkkgskivvhrdgrlyrdevaafkkygelygyslelleiikrnnprffsnekfik
gyfyklsedsvilatynqvyegthqpikvrkvygelpvevlcsqilsltlmnyssfqpik
lpatvhysdkitklmlrgiepikkegdimywl

Sequence, based on observed residues (ATOM records):

>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
klnfkdtvldakgkntkvitnlrkflelcrpfvkkdvlsveiisvsvwrkeeflkelinf
lknkgiklkikgkslilaqtreeakeklipvinkikdvdlvivflefllydfvkrellkk
mipsqvilnrtlknenlkfvllnvaeqvlaktgnipyklkeiegkvdafvgidisritrd
gktvnavaftkifnskgelvryyltsypafgekltekaigdvfslleklgfkkgskivvh
rdgrlyrdevaafkkygelygyslelleiikrnnprffsnekfikgyfyklsedsvilat
ynqvyegthqpikvrkvygelpvevlcsqilsltlmnyssfqpiklpatvhysdkitklm
lrgiepikkegdimywl

Timeline for d1yvua2:

• d1yvua2 first appeared in SCOP 1.73
  
• d1yvua2 appears in SCOPe 2.03
  
• d1yvua2 last appears in SCOPe 2.05