SCOPe 2.08: Domain d1yvra1: 1yvr A:5-363

Lineage for d1yvra1 (1yvr A:5-363)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.25: TROVE domain-like [140864] (1 family)
   consist of two superhelical sections arranged like a horse-shoe
   automatically mapped to Pfam PF05731

5. Family a.118.25.1: TROVE domain-like [140865] (1 protein)
   Pfam PF05731

6. Protein 60-kda SS-aARo ribonucleoprotein [140866] (1 species)

7. Species African clawed frog (Xenopus laevis) [TaxId:8355] [140867] (3 PDB entries)
   Uniprot P42700 5-363

8. Domain d1yvra1: 1yvr A:5-363 [124116]
   Other proteins in same PDB: d1yvra2
   automated match to d1yvpa1

Details for d1yvra1

PDB Entry: 1yvr, 1.95 Å

PDB Description: Ro autoantigen

PDB Compounds: (A:) 60-kDa SS-A/Ro ribonucleoprotein

SCOPe Domain Sequences for d1yvra1:

Sequence, based on SEQRES records:

>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
mdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallrl
iedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcripth
lftfiqfkkdlkegmkcgmwgralrkavsdwyntkdalnlamavtkykqrngwshkdllr
lshikpanegltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdelei
ihlideyrlvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevssv
cerltnekllkkarihpfhilvaletykkghgnrgklrwipdtsivealdnafyksfkl

Sequence, based on observed residues (ATOM records):

>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
mdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallrl
iedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcripth
lftfiqfkkdlwgralrkavsdwyntkdalnlamavtkykqrngwshkdllrlshikpan
egltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdeleiihlideyr
lvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevssvcerltnek
llkkarihpfhilvaletykkghlrwipdtsivealdnafyksfkl

Timeline for d1yvra1:

• d1yvra1 first appeared in SCOP 1.73
  
• d1yvra1 appears in SCOPe 2.07