SCOPe 2.05: Domain d1ytyb1: 1yty B:7-103

Lineage for d1ytyb1 (1yty B:7-103)

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.46: La domain [101051] (2 proteins)
   Pfam PF05383; RNA-binding domain

6. Protein Lupus La autoantigen N-terminal domain [101052] (2 species)

7. Species Human (Homo sapiens) [TaxId:9606] [101053] (7 PDB entries)

8. Domain d1ytyb1: 1yty B:7-103 [124020]
   Other proteins in same PDB: d1ytya2, d1ytyb2
   automated match to d1zh5b1
   protein/RNA complex

Details for d1ytyb1

PDB Entry: 1yty, 2.29 Å

PDB Description: Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen

PDB Compounds: (B:) Lupus La protein

SCOPe Domain Sequences for d1ytyb1:

Sequence; same for both SEQRES and ATOM records:

>d1ytyb1 a.4.5.46 (B:7-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
nekmaaleakichqieyyfgdfnlprdkflkeqikldegwvpleimikfnrlnrlttdfn
vivealskskaelmeisedktkirrspskplpevtde

Timeline for d1ytyb1:

• d1ytyb1 first appeared in SCOP 1.73
  
• d1ytyb1 appears in SCOPe 2.04
  
• d1ytyb1 appears in SCOPe 2.06
  
• d1ytyb1 appears in the current release, SCOPe 2.08