SCOPe 2.07: Domain d1yrrb2: 1yrr B:54-350

Lineage for d1yrrb2 (1yrr B:54-350)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.10: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82261] (1 protein)
   automatically mapped to Pfam PF01979

6. Protein N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82262] (3 species)

7. Species Escherichia coli [TaxId:562] [141808] (4 PDB entries)
   Uniprot P0AF18 54-350

8. Domain d1yrrb2: 1yrr B:54-350 [123938]
   Other proteins in same PDB: d1yrra1, d1yrrb1
   automated match to d1ymya2
   complexed with gol, po4

Details for d1yrrb2

PDB Entry: 1yrr, 2 Å

PDB Description: Crystal Structure Of The N-Acetylglucosamine-6-Phosphate Deacetylase From Escherichia Coli K12 at 2.0 A Resolution

PDB Compounds: (B:) N-acetylglucosamine-6-phosphate deacetylase

SCOPe Domain Sequences for d1yrrb2:

Sequence, based on SEQRES records:

>d1yrrb2 c.1.9.10 (B:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfndtaeavsvetleimqkaneksgctnylptlittsdelmkqgvrv
mreylakhpnqalglhlegpwlnlvkkgthnpnfvrkpdaalvdflcenadvitkvtlap
emvpaevisklanagivvsaghsnatlkeakagfragitfathlynampyitgrepglag
aildeadiycgiiadglhvdyanirnakrlkgdklclvtdatapaganieqfifagktiy
yrnglcvdengtlsgssltmiegvrnlvehcgialdevlrmatlyparaigvekrlg

Sequence, based on observed residues (ATOM records):

>d1yrrb2 c.1.9.10 (B:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfndtaeavsvetleimqkaneksgctnylptlittsdelmkqgvrv
mreylakhpnqalglhlegpwlnaalvdflcenadvitkvtlapemvpaevisklanagi
vvsaghsnatlkeakagfragitfathlynampyitgrepglagaildeadiycgiiadg
lhvdyanirnakrlkgdklclvtdatsgssltmiegvrnlvehcgialdevlrmatlypa
raigvekrlg

Timeline for d1yrrb2:

• d1yrrb2 first appeared in SCOP 1.73
  
• d1yrrb2 appears in SCOPe 2.06
  
• d1yrrb2 appears in the current release, SCOPe 2.08