SCOPe 2.07: Domain d1yp2b2: 1yp2 B:11-316

Lineage for d1yp2b2 (1yp2 B:11-316)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.6: glucose-1-phosphate thymidylyltransferase [53464] (4 proteins)
   automatically mapped to Pfam PF00483

6. Protein Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain [142688] (1 species)

7. Species Potato (Solanum tuberosum) [TaxId:4113] [142689] (3 PDB entries)
   Uniprot P23509 80-386

8. Domain d1yp2b2: 1yp2 B:11-316 [123801]
   Other proteins in same PDB: d1yp2a1, d1yp2b1, d1yp2c1, d1yp2d1
   automated match to d1yp2a2
   complexed with pmb, so4

Details for d1yp2b2

PDB Entry: 1yp2, 2.11 Å

PDB Description: Crystal structure of potato tuber ADP-glucose pyrophosphorylase

PDB Compounds: (B:) Glucose-1-phosphate adenylyltransferase small subunit

SCOPe Domain Sequences for d1yp2b2:

Sequence, based on SEQRES records:

>d1yp2b2 c.68.1.6 (B:11-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
tcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniski
yvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgtadavrqylwl
feehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideeg
riiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpg
andfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsap
iytqpr

Sequence, based on observed residues (ATOM records):

>d1yp2b2 c.68.1.6 (B:11-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
tcldpdasrsvlgiiltrlypltkkrakpavplganyrlidipvsnclnsniskiyvltq
fnsaslnrhlsrayasnegfvevlaaqqspefqgtadavrqylwlfeehtvleylilagd
hlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlq
amkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatsl
gmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpr

Timeline for d1yp2b2:

• d1yp2b2 first appeared in SCOP 1.73
  
• d1yp2b2 appears in SCOPe 2.06
  
• d1yp2b2 appears in the current release, SCOPe 2.08