SCOPe 2.08: Domain d1yo6d_: 1yo6 D:

Lineage for d1yo6d_ (1yo6 D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (73 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7
   has additional subdomain(s) that are not in the common domain
   

6. Protein Carbonyl reductase sniffer [110413] (2 species)

7. Species Nematode (Caenorhabditis elegans) [TaxId:6239] [186880] (1 PDB entry)

8. Domain d1yo6d_: 1yo6 D: [123772]
   Other proteins in same PDB: d1yo6a1
   automated match to d1snya_

Details for d1yo6d_

PDB Entry: 1yo6, 2.6 Å

PDB Description: Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans

PDB Compounds: (D:) Putative Carbonyl Reductase Sniffer

SCOPe Domain Sequences for d1yo6d_:

Sequence, based on SEQRES records:

>d1yo6d_ c.2.1.2 (D:) Carbonyl reductase sniffer {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
mspgsvvvtganrgiglglvqqlvkdknirhiiatardvekatelksikdsrvhvlpltv
tcdksldtfvskvgeivgsdglsllinnagvllsygtntepnraviaeqldvnttsvvll
tqkllpllknaaskesgdqlsvsraavitissglgsitdntsgsaqfpvlayrmskaain
mfgrtlavdlkddnvlvvnfcpgwvqtnlggknaaltveqstaelissfnkldnshngrf
fmrnlkpyef

Sequence, based on observed residues (ATOM records):

>d1yo6d_ c.2.1.2 (D:) Carbonyl reductase sniffer {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
mspgsvvvtganrgiglglvqqlvkdknirhiiatardvekatelksikdsrvhvlpltv
tcdksldtfvskvgeivgsdglsllinnagvllsygtntepnraviaeqldvnttsvvll
tqkllpllknaaskesgdqlsvsraavitissglgsitdntsgsaqfpvlayrmskaain
mfgrtlavdlkddnvlvvnfcpgweqstaelissfnkldnshngrffmrnlkpyef

Timeline for d1yo6d_:

• d1yo6d_ first appeared in SCOP 1.73, called d1yo6d1
  
• d1yo6d_ appears in SCOPe 2.07