SCOP 1.75: Domain d1ynrd1: 1ynr D:1-79

Lineage for d1ynrd1 (1ynr D:1-79)

1. Root: SCOP 1.75

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.3: Cytochrome c [46625] (1 superfamily)
   core: 3 helices; folded leaf, opened

4. Superfamily a.3.1: Cytochrome c [46626] (8 families)
   covalently-bound heme completes the core

5. Family a.3.1.1: monodomain cytochrome c [46627] (15 proteins)

6. Protein Cytochrome c552 [46636] (5 species)

7. Species Hydrogenobacter thermophilus [TaxId:940] [46640] (3 PDB entries)

8. Domain d1ynrd1: 1ynr D:1-79 [123753]
   automatically matched to d1ayg__
   complexed with hec, mpd, so4

Details for d1ynrd1

PDB Entry: 1ynr, 2 Å

PDB Description: Crystal structure of the cytochrome c-552 from Hydrogenobacter thermophilus at 2.0 resolution

PDB Compounds: (D:) Cytochrome c-552

SCOP Domain Sequences for d1ynrd1:

Sequence; same for both SEQRES and ATOM records:

>d1ynrd1 a.3.1.1 (D:1-79) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
neqlakqkgcmachdlkakkvgpayadvakkyagrkdavdylagkikkggsgvwgsvpmp
pqnvtdaeakqlaqwilsi

Timeline for d1ynrd1:

• d1ynrd1 first appeared in SCOP 1.73
  
• d1ynrd1 is called d1ynrd_ in SCOPe 2.01
  
• d1ynrd1 appears in the current release, SCOPe 2.08, called d1ynrd_