SCOPe 2.07: Domain d1ynja2: 1ynj A:50-172

Lineage for d1ynja2 (1ynj A:50-172)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
   unusual fold; contains a left-handed beta-alpha-beta unit

4. Superfamily d.181.1: Insert subdomain of RNA polymerase alpha subunit [56553] (1 family)
   automatically mapped to Pfam PF01000

5. Family d.181.1.1: Insert subdomain of RNA polymerase alpha subunit [56554] (3 proteins)

6. Protein RNA polymerase alpha subunit [56555] (3 species)

7. Species Thermus aquaticus [TaxId:271] [64461] (4 PDB entries)

8. Domain d1ynja2: 1ynj A:50-172 [123738]
   Other proteins in same PDB: d1ynja1, d1ynjb1, d1ynjc1, d1ynjd1, d1ynjk1
   automatically matched to d1i6va2
   protein/RNA complex; complexed with srn, zn

Details for d1ynja2

PDB Entry: 1ynj, 3.2 Å

PDB Description: Taq RNA polymerase-Sorangicin complex

PDB Compounds: (A:) DNA-directed RNA polymerase alpha chain

SCOPe Domain Sequences for d1ynja2:

Sequence; same for both SEQRES and ATOM records:

>d1ynja2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus aquaticus [TaxId: 271]}
gtavtsvyiedvlhefstipgvkedvveiilnlkelvvrfldpkmasttlilraegpkev
ragdftpsadveimnpdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvda
ifs

Timeline for d1ynja2:

• d1ynja2 first appeared in SCOP 1.73
  
• d1ynja2 appears in SCOPe 2.06
  
• d1ynja2 appears in the current release, SCOPe 2.08