Lineage for d1yksa2 (1yks A:325-623)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2865683Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2865684Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. 2870435Family c.37.1.14: RNA helicase [52724] (7 proteins)
    duplication: consists of two similar domains, one binds NTP and the other binds RNA; also contains an all-alpha subdomain in the C-terminal extension
  6. 2870512Protein YFV helicase, C-terminal domain [418965] (1 species)
  7. 2870513Species Yellow fever virus [TaxId:11089] [419427] (2 PDB entries)
    Uniprot P19901
  8. 2870514Domain d1yksa2: 1yks A:325-623 [123562]
    Other proteins in same PDB: d1yksa1, d1yksa3
    has additional subdomain(s) that are not in the common domain

Details for d1yksa2

PDB Entry: 1yks (more details), 1.8 Å

PDB Description: Crystal structure of yellow fever virus NS3 helicase
PDB Compounds: (A:) Genome polyprotein [contains: Flavivirin protease NS3 catalytic subunit]

SCOPe Domain Sequences for d1yksa2:

Sequence, based on SEQRES records: (download)

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase, C-terminal domain {Yellow fever virus [TaxId: 11089]}
gtsdefphsngeiedvqtdipsepwntghdwiladkrptawflpsiraanvmaaslrkag
ksvvvlnrktfereyptikqkkpdfilatdiaemganlcvervldcrtafkpvlvdegrk
vaikgplrisassaaqrrgrigrnpnrdgdsyyyseptsennahhvcwleasmlldnmev
rggmvaplygvegtktpvspgemrlrddqrkvfrelvrncdlpvwlswqvakaglktndr
kwcfegpeeheilndsgetvkcrapggakkplrprwcdervssdqsalsefikfaegrr

Sequence, based on observed residues (ATOM records): (download)

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase, C-terminal domain {Yellow fever virus [TaxId: 11089]}
gtsdefphsngeiedvqtdipsepwntghdwiladkrptawflpsiraanvmaaslrkag
ksvvvlnrktfekkpdfilatdiaemganlcvervldcrtafkpvlvdegrkvaikgplr
isassaaqrrgrigrnpnrdgdsyyyseptsennahhvcwleasmlldnmevrggmvapl
ygvegtktpvspgemrlrddqrkvfrelvrncdlpvwlswqvakaglktndrkwcfegpe
eheilndsgetvkcrapggakkplrprwcdervssdqsalsefikfaegrr

SCOPe Domain Coordinates for d1yksa2:

Click to download the PDB-style file with coordinates for d1yksa2.
(The format of our PDB-style files is described here.)

Timeline for d1yksa2: