Lineage for d1yj5b1 (1yj5 B:144-338)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148571Fold c.108: HAD-like [56783] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 2148572Superfamily c.108.1: HAD-like [56784] (26 families) (S)
    usually contains an insertion (sub)domain after strand 1
  5. 2148952Family c.108.1.9: phosphatase domain of polynucleotide kinase [82385] (2 protein domains)
    no insertion subdomains
  6. 2148953Protein 5' polynucleotide kinase-3' phosphatase, middle domain [142154] (1 species)
  7. 2148954Species Mouse (Mus musculus) [TaxId:10090] [142155] (1 PDB entry)
    Uniprot Q9JLV6 144-338
  8. 2148956Domain d1yj5b1: 1yj5 B:144-338 [123382]
    Other proteins in same PDB: d1yj5a2, d1yj5b2, d1yj5c1
    automatically matched to 1YJ5 A:144-338
    complexed with so4

Details for d1yj5b1

PDB Entry: 1yj5 (more details), 2.8 Å

PDB Description: Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme
PDB Compounds: (B:) 5' polynucleotide kinase-3' phosphatase catalytic domain

SCOPe Domain Sequences for d1yj5b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yj5b1 c.108.1.9 (B:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

SCOPe Domain Coordinates for d1yj5b1:

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Timeline for d1yj5b1: