SCOPe 2.06: Domain d1ygyb4: 1ygy B:317-451

Lineage for d1ygyb4 (1ygy B:317-451)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.81: FwdE/GAPDH domain-like [55346] (4 superfamilies)
   core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1

4. Superfamily d.81.2: Serine metabolism enzymes domain [143548] (2 families)
   contains extra C-terminal beta-hairpin

5. Family d.81.2.2: SerA intervening domain-like [143552] (1 protein)
   PfamB PB001360; this domain is found in some but not all D-3-phosphoglycerate dehydrogenases (SerA) and related enzymes

6. Protein D-3-phosphoglycerate dehydrogenase SerA [143553] (1 species)

7. Species Mycobacterium tuberculosis [TaxId:1773] [143554] (2 PDB entries)
   Uniprot P0A544 316-450

8. Domain d1ygyb4: 1ygy B:317-451 [123157]
   Other proteins in same PDB: d1ygya1, d1ygya2, d1ygya3, d1ygyb1, d1ygyb2, d1ygyb3
   automated match to d1ygya4
   complexed with tar

Details for d1ygyb4

PDB Entry: 1ygy, 2.3 Å

PDB Description: crystal structure of d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis

PDB Compounds: (B:) D-3-phosphoglycerate dehydrogenase

SCOPe Domain Sequences for d1ygyb4:

Sequence; same for both SEQRES and ATOM records:

>d1ygyb4 d.81.2.2 (B:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]}
ggvvneevapwldlvrklgvlagvlsdelpvslsvqvrgelaaeevevlrlsalrglfsa
viedavtfvnapalaaergvtaeickasespnhrsvvdvravgadgsvvtvsgtlygpql
sqkivqingrhfdlr

Timeline for d1ygyb4:

• d1ygyb4 first appeared in SCOP 1.73
  
• d1ygyb4 appears in SCOPe 2.05
  
• d1ygyb4 appears in SCOPe 2.07
  
• d1ygyb4 appears in the current release, SCOPe 2.08