SCOP 1.73: Domain d1ygyb2: 1ygy B:3-98,B:283-316

Lineage for d1ygyb2 (1ygy B:3-98,B:283-316)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

4. Superfamily c.23.12: Formate/glycerate dehydrogenase catalytic domain-like [52283] (3 families)

5. Family c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain [52284] (7 proteins)
   this domain is interrupted by the Rossmann-fold domain

6. Protein Phosphoglycerate dehydrogenase [52293] (2 species)
   has additional C-terminal domain of the ferredoxin fold

7. Species Mycobacterium tuberculosis [TaxId:1773] [142063] (1 PDB entry)
   there is an intervening domain between this domain and regulatory (C-terminal) domain

8. Domain d1ygyb2: 1ygy B:3-98,B:283-316 [123155]
   Other proteins in same PDB: d1ygya1, d1ygya3, d1ygya4, d1ygyb1, d1ygyb3, d1ygyb4
   automatically matched to 1YGY A:3-98,A:283-316
   complexed with tar

Details for d1ygyb2

PDB Entry: 1ygy, 2.3 Å

PDB Description: crystal structure of d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis

PDB Compounds: (B:) D-3-phosphoglycerate dehydrogenase

SCOP Domain Sequences for d1ygyb2:

Sequence; same for both SEQRES and ATOM records:

>d1ygyb2 c.23.12.1 (B:3-98,B:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
slpvvliadklapstvaalgdqvevrwvdgpdrdkllaavpeadallvrsattvdaevla
aapklkivaragvgldnvdvdaatargvlvvnaptsXastaeaqdragtdvaesvrlala
gefvpdavnvg

Timeline for d1ygyb2:

• d1ygyb2 is new in SCOP 1.73
  
• d1ygyb2 appears in SCOP 1.75
  
• d1ygyb2 appears in the current release, SCOPe 2.08