Lineage for d1yfra1 (1yfr A:237-453)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2014632Fold a.203: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [101352] (1 superfamily)
    multihelical; consists of two all-alpha subdomains
  4. 2014633Superfamily a.203.1: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [101353] (1 family) (S)
  5. 2014634Family a.203.1.1: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [101354] (1 protein)
  6. 2014635Protein Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [101355] (1 species)
  7. 2014636Species Aquifex aeolicus [TaxId:63363] [101356] (6 PDB entries)
  8. 2014640Domain d1yfra1: 1yfr A:237-453 [123084]
    Other proteins in same PDB: d1yfra2, d1yfra3, d1yfrb2, d1yfrb3
    automated match to d1riqa1
    protein/RNA complex; complexed with atp, mg

Details for d1yfra1

PDB Entry: 1yfr (more details), 2.15 Å

PDB Description: crystal structure of alanyl-tRNA synthetase in complex with ATP and magnesium
PDB Compounds: (A:) Alanyl-tRNA synthetase

SCOPe Domain Sequences for d1yfra1:

Sequence, based on SEQRES records: (download)

>d1yfra1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
eidiifpliqfgeevsgkkygekfetdvalrviadhlraitfaisdgvipsnegrgyvir
rilrramrfgyklgienpflykgvdlvvdimkepypelelsrefvkgivkgeekrfiktl
kagmeyiqeviqkaleegrktlsgkevftaydtygfpvdlideiarekglgidlegfqce
leeqrerarkhfkveakkvkpvyshlkelgktsafvg

Sequence, based on observed residues (ATOM records): (download)

>d1yfra1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
eidiifpliqfgeevsgkkygekfetdvalrviadhlraitfaisdgvipsnegrgyvir
rilrramrfgyklgienpflykgvdlvvdimkepypelelsrefvkgivkgeekrfiktl
kagmeyiqeviqkaleegrktlsgkevftaydtygfpvdlideiarekglgidlegfqce
leeqrerarkhpvyshlkelgktsafvg

SCOPe Domain Coordinates for d1yfra1:

Click to download the PDB-style file with coordinates for d1yfra1.
(The format of our PDB-style files is described here.)

Timeline for d1yfra1: