SCOPe 2.07: Domain d1yflb1: 1yfl B:1-259

Lineage for d1yflb1 (1yfl B:1-259)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families)

5. Family c.66.1.28: N6 adenine-specific DNA methylase, DAM [88788] (3 proteins)
   automatically mapped to Pfam PF02086

6. Protein DNA methylase T4DAM [102584] (2 species)

7. Species Bacteriophage T4 [TaxId:10665] [102585] (5 PDB entries)

8. Domain d1yflb1: 1yfl B:1-259 [123077]
   automatically matched to 1YFJ A:1-259
   protein/DNA complex; complexed with sfg

Details for d1yflb1

PDB Entry: 1yfl, 3.09 Å

PDB Description: t4dam in complex with sinefungin and 16-mer oligonucleotide showing semi-specific and specific contact and flipped base

PDB Compounds: (B:) DNA adenine methylase

SCOPe Domain Sequences for d1yflb1:

Sequence, based on SEQRES records:

>d1yflb1 c.66.1.28 (B:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirindk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkyv
fniyhskekngtdevyifn

Sequence, based on observed residues (ATOM records):

>d1yflb1 c.66.1.28 (B:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirindk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnngtd
evyifn

Timeline for d1yflb1:

• d1yflb1 first appeared in SCOP 1.73
  
• d1yflb1 appears in SCOPe 2.06
  
• d1yflb1 appears in the current release, SCOPe 2.08