SCOPe 2.08: Domain d1yfjb_: 1yfj B:

Lineage for d1yfjb_ (1yfj B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.28: N6 adenine-specific DNA methylase, DAM [88788] (3 proteins)
   automatically mapped to Pfam PF02086

6. Protein DNA methylase T4DAM [102584] (2 species)

7. Species Bacteriophage T4 [TaxId:10665] [102585] (5 PDB entries)

8. Domain d1yfjb_: 1yfj B: [123071]
   automated match to d1q0sa_
   protein/DNA complex; complexed with ca, cl, sah

Details for d1yfjb_

PDB Entry: 1yfj, 2.69 Å

PDB Description: t4dam in complex with adohcy and 15-mer oligonucleotide showing semi- specific and specific contact

PDB Compounds: (B:) DNA adenine methylase

SCOPe Domain Sequences for d1yfjb_:

Sequence; same for both SEQRES and ATOM records:

>d1yfjb_ c.66.1.28 (B:) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirindk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkyv
fniyhskekngtdevyifn

Timeline for d1yfjb_:

• d1yfjb_ first appeared in SCOP 1.73, called d1yfjb1
  
• d1yfjb_ appears in SCOPe 2.07