Lineage for d1yf8b2 (1yf8 B:134-255)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. Family b.42.2.1: Ricin B-like [50371] (11 proteins)
  6. Protein Plant cytotoxin B-chain (lectin) [50372] (5 species)
    duplication: consists of two domains of this fold
  7. Species European mistletoe (Viscum album) [TaxId:3972] [50375] (12 PDB entries)
    different sequence variants
    Uniprot Q6ITZ3 266-520; Uniprot P81446 269-531 # 91% sequence identity
  8. Domain d1yf8b2: 1yf8 B:134-255 [123053]
    Other proteins in same PDB: d1yf8a_
    automated match to d1tfmb2
    complexed with gal, nag, p6c

Details for d1yf8b2

PDB Entry: 1yf8 (more details), 2.8 Å

PDB Description: crystal structure of himalayan mistletoe rip reveals the presence of a natural inhibitor and a new functionally active sugar-binding site
PDB Compounds: (B:) Beta-galactoside-specific lectin 4

SCOPe Domain Sequences for d1yf8b2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yf8b2 b.42.2.1 (B:134-255) Plant cytotoxin B-chain (lectin) {European mistletoe (Viscum album) [TaxId: 3972]}

SCOPe Domain Coordinates for d1yf8b2 are not available.

Timeline for d1yf8b2:

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