Lineage for d1yf8b1 (1yf8 B:1-133)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2053108Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2053527Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 2053528Family b.42.2.1: Ricin B-like [50371] (11 protein domains)
  6. 2053614Protein Plant cytotoxin B-chain (lectin) [50372] (5 species)
    duplication: consists of two domains of this fold
  7. 2053627Species European mistletoe (Viscum album) [TaxId:3972] [50375] (12 PDB entries)
    different sequence variants
    Uniprot Q6ITZ3 266-520; Uniprot P81446 269-531 # 91% sequence identity
  8. 2053642Domain d1yf8b1: 1yf8 B:1-133 [123052]
    Other proteins in same PDB: d1yf8a_
    automated match to d1tfmb1
    complexed with gal, nag, p6c

Details for d1yf8b1

PDB Entry: 1yf8 (more details), 2.8 Å

PDB Description: Crystal structure of Himalayan mistletoe RIP reveals the presence of a natural inhibitor and a new functionally active sugar-binding site
PDB Compounds: (B:) Beta-galactoside-specific lectin 4

SCOPe Domain Sequences for d1yf8b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yf8b1 b.42.2.1 (B:1-133) Plant cytotoxin B-chain (lectin) {European mistletoe (Viscum album) [TaxId: 3972]}

SCOPe Domain Coordinates for d1yf8b1:

Click to download the PDB-style file with coordinates for d1yf8b1.
(The format of our PDB-style files is described here.)

Timeline for d1yf8b1:

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