SCOPe 2.07: Domain d1yf3b_: 1yf3 B:

Lineage for d1yf3b_ (1yf3 B:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families)

5. Family c.66.1.28: N6 adenine-specific DNA methylase, DAM [88788] (3 proteins)
   automatically mapped to Pfam PF02086

6. Protein DNA methylase T4DAM [102584] (2 species)

7. Species Bacteriophage T4 [TaxId:10665] [102585] (5 PDB entries)

8. Domain d1yf3b_: 1yf3 B: [123047]
   automated match to d1q0sa_
   protein/DNA complex; complexed with gol, sah

Details for d1yf3b_

PDB Entry: 1yf3, 2.29 Å

PDB Description: t4dam in complex with adohcy and 13-mer oligonucleotide making non- and semi-specific (~1/4) contact

PDB Compounds: (B:) DNA adenine methylase

SCOPe Domain Sequences for d1yf3b_:

Sequence, based on SEQRES records:

>d1yf3b_ c.66.1.28 (B:) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirinyk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkyv
fniyhskekngtdevyifn

Sequence, based on observed residues (ATOM records):

>d1yf3b_ c.66.1.28 (B:) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirinyk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkkn
gtdevyifn

Timeline for d1yf3b_:

• d1yf3b_ first appeared in SCOP 1.73, called d1yf3b1
  
• d1yf3b_ appears in SCOPe 2.06
  
• d1yf3b_ appears in the current release, SCOPe 2.08