SCOP 1.73: Domain d1ydyb1: 1ydy B:29-356

Lineage for d1ydyb1 (1ydy B:29-356)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.18: PLC-like phosphodiesterases [51695] (3 families)

5. Family c.1.18.3: Glycerophosphoryl diester phosphodiesterase [89508] (4 proteins)
   Pfam PF03009

6. Protein Glycerophosphodiester phosphodiesterase GlpQ [110382] (1 species)

7. Species Escherichia coli [TaxId:562] [110383] (2 PDB entries)

8. Domain d1ydyb1: 1ydy B:29-356 [123007]
   automatically matched to d1t8qb_
   complexed with ca, gol

Details for d1ydyb1

PDB Entry: 1ydy, 1.7 Å

PDB Description: crystal structure of periplasmic glycerophosphodiester phosphodiesterase from escherichia coli

PDB Compounds: (B:) Glycerophosphoryl diester phosphodiesterase

SCOP Domain Sequences for d1ydyb1:

Sequence; same for both SEQRES and ATOM records:

>d1ydyb1 c.1.18.3 (B:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkfln

Timeline for d1ydyb1:

• d1ydyb1 is new in SCOP 1.73
  
• d1ydyb1 appears in SCOP 1.75
  
• d1ydyb1 appears in the current release, SCOPe 2.08, called d1ydyb_