SCOPe 2.08: Domain d1ydyb_: 1ydy B:

Lineage for d1ydyb_ (1ydy B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.18: PLC-like phosphodiesterases [51695] (4 families)

5. Family c.1.18.3: Glycerophosphoryl diester phosphodiesterase [89508] (5 proteins)
   Pfam PF03009

6. Protein Glycerophosphodiester phosphodiesterase GlpQ [110382] (1 species)

7. Species Escherichia coli [TaxId:562] [110383] (2 PDB entries)
   Uniprot P09394

8. Domain d1ydyb_: 1ydy B: [123007]
   automated match to d1t8qb_
   complexed with ca, gol

Details for d1ydyb_

PDB Entry: 1ydy, 1.7 Å

PDB Description: crystal structure of periplasmic glycerophosphodiester phosphodiesterase from escherichia coli

PDB Compounds: (B:) Glycerophosphoryl diester phosphodiesterase

SCOPe Domain Sequences for d1ydyb_:

Sequence; same for both SEQRES and ATOM records:

>d1ydyb_ c.1.18.3 (B:) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkfln

Timeline for d1ydyb_:

• d1ydyb_ first appeared in SCOP 1.73, called d1ydyb1
  
• d1ydyb_ appears in SCOPe 2.07