SCOPe 2.05: Domain d1ydya_: 1ydy A:

Lineage for d1ydya_ (1ydy A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.18: PLC-like phosphodiesterases [51695] (4 families)

5. Family c.1.18.3: Glycerophosphoryl diester phosphodiesterase [89508] (5 proteins)
   Pfam PF03009

6. Protein Glycerophosphodiester phosphodiesterase GlpQ [110382] (1 species)

7. Species Escherichia coli [TaxId:562] [110383] (2 PDB entries)
   Uniprot P09394

8. Domain d1ydya_: 1ydy A: [123006]
   automated match to d1t8qb_
   complexed with ca, gol

Details for d1ydya_

PDB Entry: 1ydy, 1.7 Å

PDB Description: crystal structure of periplasmic glycerophosphodiester phosphodiesterase from escherichia coli

PDB Compounds: (A:) Glycerophosphoryl diester phosphodiesterase

SCOPe Domain Sequences for d1ydya_:

Sequence; same for both SEQRES and ATOM records:

>d1ydya_ c.1.18.3 (A:) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkfln

Timeline for d1ydya_:

• d1ydya_ first appeared in SCOP 1.73, called d1ydya1
  
• d1ydya_ appears in SCOPe 2.04
  
• d1ydya_ appears in SCOPe 2.06
  
• d1ydya_ appears in the current release, SCOPe 2.08