Lineage for d1ydxa1 (1ydx A:1-193)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2615652Fold d.287: DNA methylase specificity domain [116733] (1 superfamily)
    comprises the N-terminal, double beta-helix like structure and C-terminal alpha-hairpin
  4. 2615653Superfamily d.287.1: DNA methylase specificity domain [116734] (2 families) (S)
  5. 2615681Family d.287.1.2: Type I restriction modification DNA specificity domain [143979] (2 proteins)
    Pfam PF01420
  6. 2615682Protein Bipartite methylase S protein MG438 [143980] (1 species)
    duplication; contains two structural repeats made of this domain and extra C-terminal coiled coil each; overall structure is similar to MJ0130
  7. 2615683Species Mycoplasma genitalium [TaxId:2097] [143981] (1 PDB entry)
    Uniprot Q49434 1-193! Uniprot Q49434 194-374
  8. 2615684Domain d1ydxa1: 1ydx A:1-193 [123004]
    complexed with cl

Details for d1ydxa1

PDB Entry: 1ydx (more details), 2.3 Å

PDB Description: Crystal structure of Type-I restriction-modification system S subunit from M. genitalium
PDB Compounds: (A:) type I restriction enzyme specificity protein MG438

SCOPe Domain Sequences for d1ydxa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
mtpklklnnninwtkrtidslfdlkkgemlekelitpegkyeyfnggvknsgrtdkfntf
kntisvivggscgyvrladknffcgqsnctlnlldpleldlkfayyalksqqeriealaf
gttiqnirisdlkeleipftsnkneqhaiantlsvfderlenlaslieinrklrdeyahk
lfsldeaflshwk

SCOPe Domain Coordinates for d1ydxa1:

Click to download the PDB-style file with coordinates for d1ydxa1.
(The format of our PDB-style files is described here.)

Timeline for d1ydxa1:

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Domains from same chain:
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d1ydxa2