SCOPe 2.07: Domain d1ybob2: 1ybo B:197-272

Lineage for d1ybob2 (1ybo B:197-272)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.36: PDZ domain-like [50155] (1 superfamily)
   contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix

4. Superfamily b.36.1: PDZ domain-like [50156] (7 families)
   peptide-binding domain

5. Family b.36.1.1: PDZ domain [50157] (47 proteins)
   Pfam PF00595

6. Protein Syntenin 1 [89311] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [89312] (11 PDB entries)

8. Domain d1ybob2: 1ybo B:197-272 [122900]
   Other proteins in same PDB: d1yboa3, d1ybob3
   automatically matched to d1ntea_

Details for d1ybob2

PDB Entry: 1ybo, 2.3 Å

PDB Description: crystal structure of the pdz tandem of human syntenin with syndecan peptide

PDB Compounds: (B:) Syntenin 1

SCOPe Domain Sequences for d1ybob2:

Sequence; same for both SEQRES and ATOM records:

>d1ybob2 b.36.1.1 (B:197-272) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
rtitmhkdstghvgfifkngkitsivkdssaarnglltehniceingqnviglkdsqiad
ilstsgtvvtitimpa

Timeline for d1ybob2:

• d1ybob2 first appeared in SCOP 1.73
  
• d1ybob2 appears in SCOPe 2.06
  
• d1ybob2 appears in the current release, SCOPe 2.08