SCOPe 2.08: Domain d1yb2a1: 1yb2 A:6-255

Lineage for d1yb2a1 (1yb2 A:6-255)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.13: tRNA(1-methyladenosine) methyltransferase-like [64117] (5 proteins)
   contains additional N-terminal beta-sandwich domain

6. Protein Hypothetical protein Ta0852 [142585] (1 species)
   forms dimer similar to half-tetramer of the other members but with swapped N-terminal domains; variant topology of the N-terminal domain

7. Species Thermoplasma acidophilum [TaxId:2303] [142586] (1 PDB entry)
   Uniprot Q9HJW1 6-255

8. Domain d1yb2a1: 1yb2 A:6-255 [122868]

Details for d1yb2a1

PDB Entry: 1yb2, 2.01 Å

PDB Description: Structure of a putative methyltransferase from Thermoplasma acidophilum.

PDB Compounds: (A:) hypothetical protein Ta0852

SCOPe Domain Sequences for d1yb2a1:

Sequence, based on SEQRES records:

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
pvilvsedeygkfdestnsilvkgkmhhlgisrviepgdelivsgksfivsdfspmyfgr
virrntqiiseidasyiimrcglrpgmdilevgvgsgnmssyilyalngkgtltvverde
dnlkkamdnlsefydignvrtsrsdiadfisdqmydaviadipdpwnhvqkiasmmkpgs
vatfylpnfdqsektvlslsasgmhhletvelmkrrilvregatrpasddlthtafitfa
ikksgmvyri

Sequence, based on observed residues (ATOM records):

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
pvilvsedeygkfdestnsilvgkmhhlgsrviepgdelivsgksfivsdfspmyfgrvi
cglrpgmdilevgvgsgnmssyilyalngkgtltvverdednlkkamdnlsefydignvr
tsrsdiadfisdqmydaviadipdpwnhvqkiasmmkpgsvatfylpnfdqsektvlsls
asgmhhletvelmkrrilvregatrpasddlthtafitfaikksgmvyri

Timeline for d1yb2a1:

• d1yb2a1 first appeared in SCOP 1.73
  
• d1yb2a1 appears in SCOPe 2.07