SCOPe 2.08: Domain d1y5wa_: 1y5w A:

Lineage for d1y5wa_ (1y5w A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d1y5wa_: 1y5w A: [122654]
   automated match to d1q2ra_
   protein/RNA complex; complexed with gol, nez, zn

Details for d1y5wa_

PDB Entry: 1y5w, 1.58 Å

PDB Description: trna-guanine transglycosylase (tgt) in complex with 6-amino-4-[2-(4- methylphenyl)ethyl]-1,7-dihydro-8h-imidazo[4,5-g]quinazolin-8-one

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d1y5wa_:

Sequence, based on SEQRES records:

>d1y5wa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryf

Sequence, based on observed residues (ATOM records):

>d1y5wa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvtkqseegvtfmlspersieiqh
llgsdivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgs
vfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkp
ddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqk
wsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryf

Timeline for d1y5wa_:

• d1y5wa_ first appeared in SCOP 1.73, called d1y5wa1
  
• d1y5wa_ appears in SCOPe 2.07