Structural Classification of Proteins and ASTRAL release 1.75 (June 2009)
Search SCOP (example):

Lineage for d1y5ib1 (1y5i B:1-509)

  1. Root: SCOP 1.75
  2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily d.58.1: 4Fe-4S ferredoxins [54862] (6 families) (S)
  5. Family d.58.1.5: Ferredoxin domains from multidomain proteins [54884] (13 protein domains)
    members of this "family" may be more closely related to other ferredoxins than to each other
  6. Protein Respiratory nitrate reductase 1 beta chain [102955] (1 species)
  7. Species Escherichia coli [TaxId:562] [102956] (7 PDB entries)
    Uniprot P11349
  8. Domain d1y5ib1: 1y5i B:1-509 [122641]
    Other proteins in same PDB: d1y5ia1, d1y5ia2, d1y5ic1
    automatically matched to d1q16b_
    complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4; mutant

Details for d1y5ib1

PDB Entry: 1y5i (more details)
PDB Description: the crystal structure of the narghi mutant nari-k86a
PDB Compounds: (B:) Respiratory nitrate reductase 1 beta chain

SCOP Domain Sequences for d1y5ib1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}
mkirsqvgmvlnldkcigchtcsvtcknvwtsregveyawfnnvetkpgqgfptdwenqe
kykggwirkingklqprmgnramllgkifanphlpgiddyyepfdfdyqnlhtapegsks
qpiarprslitgermakiekgpnweddlggefdklakdknfdniqkamysqfentfmmyl
prlcehclnpacvatcpsgaiykreedgivlidqdkcrgwrmcitgcpykkiyfnwksgk
sekcifcyprieagqptvcsetcvgrirylgvllydadaieraastenekdlyqrqldvf
ldpndpkvieqaikdgiplsvieaaqqspvykmamewklalplhpeyrtlpmvwyvppls
piqsaadagelgsngilpdveslripvqylanlltagdtkpvlralkrmlamrhykraet
vdgkvdtraleevglteaqaqemyrylaianyedrfvvpsshrelareafpekngcgftf
gdgchgsdtkfnlfnsrridaidvtskte

SCOP Domain Coordinates for d1y5ib1:

Click to download the PDB-style file with coordinates for d1y5ib1.
(The format of our PDB-style files is described here.)

Timeline for d1y5ib1:

d1y5ib1 appears in SCOP 1.73
d1y5ib1 is called d1y5ib_ in SCOP 1.75A


d1y5ib1
(click for larger image)


d1y5ib1 in context of chain



d1y5ib1 in context of PDB
Domains from other chains:
d1y5ia1, d1y5ia2, d1y5ic1

SCOP Copyright © 1994-2013 The SCOP and Astral authors
scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu