Lineage for d1y18l1 (1y18 L:1-107)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018454Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (31 PDB entries)
  8. 2018505Domain d1y18l1: 1y18 L:1-107 [122535]
    Other proteins in same PDB: d1y18a2, d1y18b1, d1y18b2, d1y18c2, d1y18d1, d1y18d2, d1y18e2, d1y18f1, d1y18f2, d1y18h1, d1y18h2, d1y18l2
    automatically matched to d1g9ml1
    complexed with cl, han; mutant

Details for d1y18l1

PDB Entry: 1y18 (more details), 2.8 Å

PDB Description: Fab fragment of catalytic elimination antibody 34E4 E(H50)D mutant in complex with hapten
PDB Compounds: (L:) Catalytic antibody 34E4 light chain

SCOPe Domain Sequences for d1y18l1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1y18l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}
elvvtqesalttspgetvtltcrsssgavttsnyatwvqekpdhlftgliggtnkrapgv
parfsgsligdraaltitgaqtedeaiyfcalwnsnhlvfgggtkleik

SCOPe Domain Coordinates for d1y18l1:

Click to download the PDB-style file with coordinates for d1y18l1.
(The format of our PDB-style files is described here.)

Timeline for d1y18l1: