Lineage for d1xb4b1 (1xb4 B:1-125)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2304501Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 2305606Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (86 families) (S)
    contains a small beta-sheet (wing)
  5. 2306857Family a.4.5.54: Vacuolar sorting protein domain [109692] (3 proteins)
    duplication: tandem repeat of two "winged-helix" domains
  6. 2306858Protein Vacuolar protein sorting-associated protein VPS25 [109697] (1 species)
  7. 2306859Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109698] (3 PDB entries)
    Uniprot P47142
  8. 2306862Domain d1xb4b1: 1xb4 B:1-125 [121834]
    automated match to d1xb4a1

Details for d1xb4b1

PDB Entry: 1xb4 (more details), 3.1 Å

PDB Description: crystal structure of subunit vps25 of the endosomal trafficking complex escrt-ii
PDB Compounds: (B:) Hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region

SCOPe Domain Sequences for d1xb4b1:

Sequence, based on SEQRES records: (download)

>d1xb4b1 a.4.5.54 (B:1-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

Sequence, based on observed residues (ATOM records): (download)

>d1xb4b1 a.4.5.54 (B:1-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d1xb4b1:

Click to download the PDB-style file with coordinates for d1xb4b1.
(The format of our PDB-style files is described here.)

Timeline for d1xb4b1: