SCOPe 2.05: Domain d1wdsa1: 1wds A:5-495

Lineage for d1wdsa1 (1wds A:5-495)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein beta-Amylase [51481] (3 species)
   Common fold covers whole protein structure

7. Species Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
   Uniprot P10538

8. Domain d1wdsa1: 1wds A:5-495 [120910]
   complexed with glc, so4

Details for d1wdsa1

PDB Entry: 1wds, 1.64 Å

PDB Description: the role of an inner loop in the catalytic mechanism of soybean beta- amylase

PDB Compounds: (A:) beta-amylase

SCOPe Domain Sequences for d1wdsa1:

Sequence; same for both SEQRES and ATOM records:

>d1wdsa1 c.1.8.1 (A:5-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}
snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp
kqydwrayrsllqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifyt
nrsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflesgliidievglgpa
gelrypsypqsqgwefpgigefqcydkylkadfkaavaraghpewelpddagkyndvpes
tgffksngtyvtekgkffltwysnkllnhgdqildeankaflgckvklaikvsgihwwyk
venhaaeltagyynlndrdgyrpiarmlsrhhailnfaclemrdseqpsdaksgpqelvq
qvlsggwredirvagenalprydataynqiilnarpqgvnnngppklsmfgvtylrlsdd
llqksnfnifkkfvlkmhadqdycanpqkynhaitplkpsapkipievlleatkptlpfp
wlpetdmkvdg

Timeline for d1wdsa1:

• d1wdsa1 first appeared in SCOP 1.73
  
• d1wdsa1 appears in SCOPe 2.04
  
• d1wdsa1 appears in SCOPe 2.06
  
• d1wdsa1 appears in the current release, SCOPe 2.08