SCOPe 2.08: Domain d1w8qd_: 1w8q D:

Lineage for d1w8qd_ (1w8q D:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

5. Family e.3.1.3: Dac-like [144040] (3 proteins)
   Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

6. Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species)

7. Species Actinomadura sp. [TaxId:1989] [144044] (19 PDB entries)
   Uniprot P39045 50-516

8. Domain d1w8qd_: 1w8q D: [120733]
   automated match to d1w79a1
   complexed with co, so4

Details for d1w8qd_

PDB Entry: 1w8q, 2.85 Å

PDB Description: crystal structure of the dd-transpeptidase-carboxypeptidase from actinomadura r39

PDB Compounds: (D:) d-alanyl-d-alanine carboxypeptidase

SCOPe Domain Sequences for d1w8qd_:

Sequence; same for both SEQRES and ATOM records:

>d1w8qd_ e.3.1.3 (D:) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]}
rltelredidailedpalegavsgvvvvdtatgeelysrdggeqllpasnmklftaaaal
evlgadhsfgtevaaesapgrrgevqdlylvgrgdptlsaedldamaaevaasgvrtvrg
dlyaddtwfdserlvddwwpedepyaysaqisaltvahgerfdtgvtevsvtpaaegepa
dvdlgaaegyaeldnravtgaagsantlvidrpvgtntiavtgslpadaapvtalrtvde
paalaghlfeealesngvtvkgdvglggvpadwqdaevladhtsaelseilvpfmkfsnn
ghaemlvksigqetagagtwdaglvgveealsglgvdtaglvlndgsglsrgnlvtadtv
vdllgqagsapwaqtwsaslpvagesdpfvggtlanrmrgtaaegvveaktgtmsgvsal
sgyvpgpegelafsivnnghsgpaplavqdaiavrlaeyaghqapeg

Timeline for d1w8qd_:

• d1w8qd_ first appeared in SCOP 1.73, called d1w8qd1
  
• d1w8qd_ appears in SCOPe 2.07