SCOP 1.73: Domain d1w5da1: 1w5d A:5-462

Lineage for d1w5da1 (1w5d A:5-462)

1. Root: SCOP 1.73

2. Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (3 families)

5. Family e.3.1.3: Dac-like [144040] (3 proteins)
   Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (scop_fa 69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

6. Protein Penicillin-binding protein DacC [144041] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [144042] (1 PDB entry)

8. Domain d1w5da1: 1w5d A:5-462 [120642]
   complexed with ca

Details for d1w5da1

PDB Entry: 1w5d, 2.1 Å

PDB Description: crystal structure of pbp4a from bacillus subtilis

PDB Compounds: (A:) penicillin-binding protein

SCOP Domain Sequences for d1w5da1:

Sequence; same for both SEQRES and ATOM records:

>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]}
dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
aetksgkklvfsillnglideedgkdiedqiavilanq

Timeline for d1w5da1:

• d1w5da1 is new in SCOP 1.73
  
• d1w5da1 appears in SCOP 1.75
  
• d1w5da1 appears in the current release, SCOPe 2.08