Lineage for d1vs8m1 (1vs8 M:1-136)

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 721795Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 721932Superfamily d.41.4: Ribosomal protein L16p/L10e [54686] (2 families) (S)
  5. 721976Family d.41.4.2: Ribosomal protein L16p [117888] (1 protein)
    Pfam PF00252
  6. 721977Protein Ribosomal protein L16p [117889] (2 species)
  7. 721978Species Escherichia coli [TaxId:562] [143200] (9 PDB entries)
  8. 721984Domain d1vs8m1: 1vs8 M:1-136 [120510]
    Other proteins in same PDB: d1vs801, d1vs811, d1vs821, d1vs831, d1vs841, d1vs8l1, d1vs8p1, d1vs8r1, d1vs8u1, d1vs8v1, d1vs8x1, d1vs8z1
    automatically matched to 2AW4 M:1-136
    complexed with mg

Details for d1vs8m1

PDB Entry: 1vs8 (more details), 3.46 Å

PDB Description: Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
PDB Compounds: (M:) 50S ribosomal protein L16

SCOP Domain Sequences for d1vs8m1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vs8m1 d.41.4.2 (M:1-136) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

SCOP Domain Coordinates for d1vs8m1:

Click to download the PDB-style file with coordinates for d1vs8m1.
(The format of our PDB-style files is described here.)

Timeline for d1vs8m1: