SCOPe 2.05: Domain d1vs611: 1vs6 1:1-54

Lineage for d1vs611 (1vs6 1:1-54)

1. Root: SCOPe 2.05

2. Class g: Small proteins [56992] (92 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families)

5. Family g.41.8.6: Ribosomal protein L33p [144203] (1 protein)
   Pfam PF00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members

6. Protein Ribosomal protein L33p [144204] (3 species)

7. Species Escherichia coli [TaxId:562] [144205] (9 PDB entries)
   Uniprot P0A7N9 1-54

8. Domain d1vs611: 1vs6 1:1-54 [120491]
   Other proteins in same PDB: d1vs601, d1vs621, d1vs631, d1vs641, d1vs6c1, d1vs6c2, d1vs6d1, d1vs6e1, d1vs6f1, d1vs6g1, d1vs6g2, d1vs6h1, d1vs6h2, d1vs6i1, d1vs6i2, d1vs6j1, d1vs6k1, d1vs6l1, d1vs6m1, d1vs6n1, d1vs6o1, d1vs6p1, d1vs6q1, d1vs6r1, d1vs6s1, d1vs6t1, d1vs6u1, d1vs6v1, d1vs6w1, d1vs6x1, d1vs6y1, d1vs6z1
   complexed with mg
   complexed with mg

Details for d1vs611

PDB Entry: 1vs6, 3.46 Å

PDB Description: Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.

PDB Compounds: (1:) 50S ribosomal protein L33

SCOPe Domain Sequences for d1vs611:

Sequence; same for both SEQRES and ATOM records:

>d1vs611 g.41.8.6 (1:1-54) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik

Timeline for d1vs611:

• d1vs611 first appeared in SCOP 1.73
  
• d1vs611 appears in SCOPe 2.04
  
• d1vs611 appears in SCOPe 2.06
  
• d1vs611 appears in the current release, SCOPe 2.08