SCOPe 2.04: Domain d1vrla2: 1vrl A:234-360

Lineage for d1vrla2 (1vrl A:234-360)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.113: Nudix [55810] (1 superfamily)
   beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
   contains beta-grasp motif

4. Superfamily d.113.1: Nudix [55811] (8 families)

5. Family d.113.1.3: MutY C-terminal domain-like [103211] (2 proteins)

6. Protein Adenine glycosylase MutY, C-terminal domain [103212] (1 species)

7. Species Bacillus stearothermophilus [TaxId:1422] [103213] (4 PDB entries)

8. Domain d1vrla2: 1vrl A:234-360 [120471]
   Other proteins in same PDB: d1vrla1
   automated match to d1rrsa2
   protein/DNA complex; complexed with ade, ca, sf4

Details for d1vrla2

PDB Entry: 1vrl, 2.5 Å

PDB Description: MutY adenine glycosylase in complex with DNA and soaked adenine free base

PDB Compounds: (A:) MutY

SCOPe Domain Sequences for d1vrla2:

Sequence, based on SEQRES records:

>d1vrla2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
vkqvplavavladdegrvlirkrdstgllanlwefpscetdgadgkekleqmvgeqyglq
veltepivsfehafshlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwr
eykewas

Sequence, based on observed residues (ATOM records):

>d1vrla2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
vkqvplavavladdegrvlirkrdstgllanlwefpscetddgkekleqmvglqveltep
ivsfehafshlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwreykewa
s

Timeline for d1vrla2:

• d1vrla2 first appeared in SCOP 1.73
  
• d1vrla2 appears in SCOPe 2.03
  
• d1vrla2 appears in SCOPe 2.05
  
• d1vrla2 appears in the current release, SCOPe 2.08