SCOPe 2.08: Domain d1vr6d2: 1vr6 D:1-338

Lineage for d1vr6d2 (1vr6 D:1-338)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.4: Class I DAHP synthetase [51599] (3 proteins)

6. Protein automated matches [190083] (10 species)
   not a true protein

7. Species Thermotoga maritima [TaxId:2336] [186804] (3 PDB entries)

8. Domain d1vr6d2: 1vr6 D:1-338 [120442]
   Other proteins in same PDB: d1vr6a3, d1vr6b3, d1vr6c3, d1vr6d3
   automated match to d1rzma_

Details for d1vr6d2

PDB Entry: 1vr6, 1.92 Å

PDB Description: Crystal structure of Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase) (TM0343) from Thermotoga Maritima at 1.92 A resolution

PDB Compounds: (D:) phospho-2-dehydro-3-deoxyheptonate aldolase

SCOPe Domain Sequences for d1vr6d2:

Sequence, based on SEQRES records:

>d1vr6d2 c.1.10.4 (D:1-338) automated matches {Thermotoga maritima [TaxId: 2336]}
mivvlkpgsteedirkvvklaesynlkchiskgqertvigiigddryvvadkfesldcve
svvrvlkpyklvsrefhpedtvidlgdvkigngyftiiagpcsvegremlmetahflsel
gvkvlrggaykprtspysfqglgekgleylreaadkygmyvvtealgeddlpkvaeyadi
iqigarnaqnfrllskagsynkpvllkrgfmntieefllsaeyiansgntkiilcergir
tfekatrntldisavpiirkeshlpilvdpshsggrrdlviplsraaiavgahgiivevh
pepekalsdgkqsldfelfkelvqemkkladalgvkvn

Sequence, based on observed residues (ATOM records):

>d1vr6d2 c.1.10.4 (D:1-338) automated matches {Thermotoga maritima [TaxId: 2336]}
mivvlkpgsteedirkvvklaesynlkchiskgqertvigiigddryvvadkfesldcve
svvrvlkpyklvsrefhpedtvidlgdvkigngyftiiagpcsvegremlmetahflsel
gvkvlrggaykprtspsfqglgekgleylreaadkygmyvvtealgeddlpkvaeyadii
qigarnaqnfrllskagsynkpvllkrgfmntieefllsaeyiansgntkiilcergirt
fekatrntldisavpiirkeshlpilvdpshsggrrdlviplsraaiavgahgiivevhp
epekalsdgkqsldfelfkelvqemkkladalgvkvn

Timeline for d1vr6d2:

• d1vr6d2 first appeared in SCOP 1.73, called d1vr6d1
  
• d1vr6d2 appears in SCOPe 2.07