SCOPe 2.06: Domain d1vq4b1: 1vq4 B:1-337

Lineage for d1vq4b1 (1vq4 B:1-337)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
   barrel, closed; n=6, S=10; greek-key

4. Superfamily b.43.3: Translation proteins [50447] (7 families)

5. Family b.43.3.2: Ribosomal protein L3 [50461] (1 protein)
   automatically mapped to Pfam PF00297

6. Protein Ribosomal protein L3 [50462] (4 species)
   superfamily fold is elaborated with additional structures

7. Species Haloarcula marismortui [TaxId:2238] [50463] (58 PDB entries)
   Uniprot P20279

8. Domain d1vq4b1: 1vq4 B:1-337 [120073]
   Other proteins in same PDB: d1vq411, d1vq421, d1vq431, d1vq4a1, d1vq4a2, d1vq4c1, d1vq4d1, d1vq4e1, d1vq4e2, d1vq4f1, d1vq4g1, d1vq4h1, d1vq4i1, d1vq4j1, d1vq4k1, d1vq4l1, d1vq4m1, d1vq4n1, d1vq4o1, d1vq4p1, d1vq4q1, d1vq4r1, d1vq4s1, d1vq4t1, d1vq4u1, d1vq4v1, d1vq4w1, d1vq4x1, d1vq4y1, d1vq4z1
   automatically matched to d1jj2b_
   protein/RNA complex; complexed with cd, cl, k, mg, na

Details for d1vq4b1

PDB Entry: 1vq4, 2.7 Å

PDB Description: The structure of the transition state analogue "DAA" bound to the large ribosomal subunit of Haloarcula marismortui

PDB Compounds: (B:) 50S ribosomal protein L3P

SCOPe Domain Sequences for d1vq4b1:

Sequence; same for both SEQRES and ATOM records:

>d1vq4b1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Haloarcula marismortui [TaxId: 2238]}
pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
pregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtldvpedhd
pdaaeeqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhald
ivedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlg
pwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgs
vpgpdkrlvrfrpavrpndqprldpevryvsnesnqg

Timeline for d1vq4b1:

• d1vq4b1 first appeared in SCOP 1.73
  
• d1vq4b1 appears in SCOPe 2.05
  
• d1vq4b1 appears in SCOPe 2.07
  
• d1vq4b1 appears in the current release, SCOPe 2.08