Lineage for d1vcvb1 (1vcv B:1-226)

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 681098Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 683918Superfamily c.1.10: Aldolase [51569] (8 families) (S)
    Common fold covers whole protein structure
  5. 683919Family c.1.10.1: Class I aldolase [51570] (12 proteins)
    the catalytic lysine forms schiff-base intermediate with substrate
    possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels
  6. 684034Protein Deoxyribose-phosphate aldolase DeoC [69394] (6 species)
  7. 684041Species Archaeon Pyrobaculum aerophilum [TaxId:13773] [141830] (1 PDB entry)
  8. 684043Domain d1vcvb1: 1vcv B:1-226 [119989]
    automatically matched to 1VCV A:1-226
    complexed with zn

Details for d1vcvb1

PDB Entry: 1vcv (more details), 2 Å

PDB Description: Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum
PDB Compounds: (B:) Probable deoxyribose-phosphate aldolase

SCOP Domain Sequences for d1vcvb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vcvb1 c.1.10.1 (B:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

SCOP Domain Coordinates for d1vcvb1:

Click to download the PDB-style file with coordinates for d1vcvb1.
(The format of our PDB-style files is described here.)

Timeline for d1vcvb1: