SCOP 1.73: Domain d1vcgc1: 1vcg C:23-332

Lineage for d1vcgc1 (1vcg C:23-332)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (1 family)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (18 proteins)

6. Protein Isopentenyl-diphosphate delta-isomerase [89454] (2 species)

7. Species Thermus thermophilus [TaxId:274] [141760] (2 PDB entries)

8. Domain d1vcgc1: 1vcg C:23-332 [119978]
   automatically matched to 1VCF A:23-332
   complexed with fmn

Details for d1vcgc1

PDB Entry: 1vcg, 3.02 Å

PDB Description: Crystal Structure of IPP isomerase at P43212

PDB Compounds: (C:) Isopentenyl-diphosphate delta-isomerase

SCOP Domain Sequences for d1vcgc1:

Sequence, based on SEQRES records:

>d1vcgc1 c.1.4.1 (C:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
ktttglegfrlryqalaglalsevdlttpflgktlkapfligamtggeengerinlalae
aaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygrddllrlve
mleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalalr
dlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplvas
ggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarnp
keargrverv

Sequence, based on observed residues (ATOM records):

>d1vcgc1 c.1.4.1 (C:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
ktttglegfrlryqalaglalsevdlttpflgktlkapfligamterinlalaeaaealg
vgmmlgsgrillerpealrrvrkvapkallianlglaqlrrygrddllrlvemleadala
fhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalalrdlplaavd
vagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplvasggvytgtd
gakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarnpkeargrve
rv

Timeline for d1vcgc1:

• d1vcgc1 is new in SCOP 1.73
  
• d1vcgc1 appears in SCOP 1.75
  
• d1vcgc1 appears in the current release, SCOPe 2.08, called d1vcgc_