SCOP 1.75: Domain d1vbka2: 1vbk A:1-175

Lineage for d1vbka2 (1vbk A:1-175)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.308: THUMP domain [143436] (1 superfamily)
   contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel

4. Superfamily d.308.1: THUMP domain-like [143437] (3 families)
   predicted RNA-binding function

5. Family d.308.1.1: THUMP domain [143438] (2 proteins)
   Pfam PF02926

6. Protein Hypothetical protein PH1313, N-terminal domain [143441] (1 species)

7. Species Archaeon Pyrococcus horikoshii [TaxId:53953] [143442] (1 PDB entry)
   Uniprot O59053 1-175

8. Domain d1vbka2: 1vbk A:1-175 [119958]
   Other proteins in same PDB: d1vbka1, d1vbkb1
   complexed with mrd

Details for d1vbka2

PDB Entry: 1vbk, 1.9 Å

PDB Description: Crystal structure of PH1313 from Pyrococcus horikoshii Ot3

PDB Compounds: (A:) hypothetical protein PH1313

SCOP Domain Sequences for d1vbka2:

Sequence; same for both SEQRES and ATOM records:

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
mnvvivrygeigtksrqtrswfekilmnnirealvteevpykeifsrhgriivktnspke
aanvlvrvfgivsispameveaslekinrtallmfrkkakevgkerpkfrvtarritkef
pldsleiqakvgeyilnnencevdlknydieigieimqgkayiytekikgwgglp

Timeline for d1vbka2:

• d1vbka2 first appeared in SCOP 1.73
  
• d1vbka2 appears in SCOPe 2.01
  
• d1vbka2 appears in the current release, SCOPe 2.08