Lineage for d1vbka2 (1vbk A:1-175)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3010566Fold d.308: THUMP domain [143436] (1 superfamily)
    contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel
  4. 3010567Superfamily d.308.1: THUMP domain-like [143437] (3 families) (S)
    predicted RNA-binding function
  5. 3010568Family d.308.1.1: THUMP domain [143438] (2 proteins)
    Pfam PF02926
  6. 3010569Protein Hypothetical protein PH1313, N-terminal domain [143441] (1 species)
  7. 3010570Species Pyrococcus horikoshii [TaxId:53953] [143442] (1 PDB entry)
    Uniprot O59053 1-175
  8. 3010571Domain d1vbka2: 1vbk A:1-175 [119958]
    Other proteins in same PDB: d1vbka1, d1vbkb1
    complexed with mrd

Details for d1vbka2

PDB Entry: 1vbk (more details), 1.9 Å

PDB Description: Crystal structure of PH1313 from Pyrococcus horikoshii Ot3
PDB Compounds: (A:) hypothetical protein PH1313

SCOPe Domain Sequences for d1vbka2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
mnvvivrygeigtksrqtrswfekilmnnirealvteevpykeifsrhgriivktnspke
aanvlvrvfgivsispameveaslekinrtallmfrkkakevgkerpkfrvtarritkef
pldsleiqakvgeyilnnencevdlknydieigieimqgkayiytekikgwgglp

SCOPe Domain Coordinates for d1vbka2:

Click to download the PDB-style file with coordinates for d1vbka2.
(The format of our PDB-style files is described here.)

Timeline for d1vbka2:

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d1vbka1